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Machine Learning to Find Areas of Rotors Sustaining Atrial Fibrillation from the ECG

Abstract

Atrial fibrillation (AF) is the most frequent irregular heart rhythm due to disorganized atrial electrical activity, often sustained by rotational drivers called rotors. The non-invasive localization of AF drivers can lead to improved personalized ablation strategy, suggesting pulmonary vein (PV) isolation or more complex extra-PV ablation procedures in case the driver is on other atrial regions. We used a Machine Learning approach to characterize and discriminate simulated single stable rotors (1R) location: PVs, left atrium (LA) excluding the PVs, and right atrium (RA), utilizing solely non-invasive signals (i.e., the 12-lead ECG). 1R episodes sustaining AF were simulated. 128 features were extracted from the signals. Greedy forward algorithm was implemented to select the best feature set which was fed to a decision tree classifier with hold-out cross-validation technique. All tested features showed significant discriminatory power, especially those based on recurrence quantification analysis (up to 80.9% accuracy with single feature classification). The decision tree classifier achieved 89.4% test accuracy with 18 features on simulated data, with sensitivities of 93.0%, 82.4%, and 83.3% for RA, LA, and PV classes, respectively. Our results show that a machine learning approach can potentially identify the location of 1R sustaining AF using the 12-lead ECG. Luongo, Giorgio; Azzolin, Luca; Rivolta, Massimo Walter; Paggi de Almeida, Tiago; Martínez, Juan Pablo; Coutinho Soriano, Diogo; Doessel, Olaf; Sassi, Roberto; Laguna Lasaosa, Pablo; Loewe, Axel

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Machine Learning to Find Areas of Rotors Sustaining Atrial Fibrillation from the ECG

Author: Luongo, Giorgio; Sassi, Roberto; Paggi de Almeida, Tiago; Rivolta, Massimo Walter; Coutinho Soriano, Diogo; Martínez, Juan Pablo; Loewe, Axel; Azzolin, Luca; Laguna Lasaosa, Pablo; Doessel, Olaf
Year: 2020
DOI: 10.22489/CinC.2020.181
Source: https://zaguan.unizar.es/record/99467/files/texto_completo.pdf
Machine Lea ning o Find A eas o Ro o s Sus aining A ial Fib illa ion F om
he ECG
Gio gio Luongo1, Luca Azzolin1, Massimo W Ri ol a2, Tiago P Almeida3, Juan Pablo Ma ínez4,
Diogo C So iano5, Ola Dössel1, Robe o Sassi2, Pablo Laguna4, Axel Loewe1
1Ins i u e o Biomedical Enginee ing, Ka ls uhe Ins i u e o Technology (KIT), Ka ls uhe, Ge many
2Dipa imen o di In o ma ica, Uni e si à degli S udi di Milano, Milan, I aly
3Depa men o Ca dio ascula Sciences, Uni e si y o Leices e , Leices e , UK
4I3A, Uni e sidad de Za agoza, and CIBER-BNN, Za agoza, Spain
5Enginee ing, Modelling and Applied Social Sciences Cen e, ABC Fede al Uni e si y, São Be na do
do Campo, B azil
Abs ac
A ial ib illa ion (AF) is he mos equen i egula
hea hy hm due o diso ganized a ial elec ical ac i i y,
o en sus ained by o a ional d i e s called o o s.
The non-in asi e localiza ion o AF d i e s can lead
o imp o ed pe sonalized abla ion s a egy, sugges ing
pulmona y ein (PV) isola ion o mo e complex ex a-
PV abla ion p ocedu es in case he d i e is on o he
a ial egions. We used a Machine Lea ning app oach
o cha ac e ize and disc imina e simula ed single s able
o o s (1R) loca ion: PVs, le a ium (LA) excluding he
PVs, and igh a ium (RA), u ilizing solely non-in asi e
signals (i.e., he 12-lead ECG). 1R episodes sus aining
AF we e simula ed. 128 ea u es we e ex ac ed om he
signals. G eedy o wa d algo i hm was implemen ed o
selec he bes ea u e se which was ed o a decision
ee classi ie wi h hold-ou c oss- alida ion echnique.
All es ed ea u es showed signi ican disc imina o y
powe , especially hose based on ecu ence quan i ica ion
analysis (up o 80.9% accu acy wi h single ea u e
classi ica ion). The decision ee classi ie achie ed 89.4%
es accu acy wi h 18 ea u es on simula ed da a, wi h
sensi i i ies o 93.0%, 82.4%, and 83.3% o RA, LA, and
PV classes, espec i ely. Ou esul s show ha a machine
lea ning app oach can po en ially iden i y he loca ion o
1R sus aining AF using he 12-lead ECG.
1. In oduc ion
A ial ib illa ion (AF) is he mos common sus ained
a hy hmia in clinical p ac ice and a leading cause o
hospi aliza ion and dea h [1]. This a hy hmia is o en
sus ained by localized unc ional een an ci cui s called
o o s, cha ac e ized by cu ed wa e on s and wa e ails
ha mee each o he a a singula i y poin [2]. One
common he apy o e mina e AF is abla ion. Typically,
“ igge s” ha s a AF and/o he “subs a e” ha
pa icipa es in i s pe pe ua ion a e a ge ed du ing abla ion.
Howe e , i emains unclea which o he wo app oaches
is he mos e ec i e o ea ing AF, specially in ad anced
s ages o he disease. Na ayan e al. showed ha i
is impo an o localize and abla e o o s, ocal sou ces
d i e s o o ganizing sou ces o ib illa ion o e mina e
AF [3]. Addi ionally, igge s and sus aining mechanisms
a e o en localized in he pulmona y eins (PVs) [4]. Thus,
PV isola ion (PVI) is he i s abla ion p ocedu es applied
o y o e mina e AF.
In his p elimina y wo k, we sough o cha ac e ize and
iden i y single s able o o s (1R) loca ed nea he PVs,
on ex a-PV le a ium (LA) a eas, and on igh a ium
(RA) a eas by using 12-lead elec oca diog am (ECG) in
a simula ion s udy. This non-in asi e me hod could help
guide abla ion p ocedu es, highligh ing a ial egions ha
may be impo an in he AF pe pe ua ion, and hence a ge s
o abla ion. In case o o o s iden i ied wi hin he PVs,
he applica ion o a p io i in asi e and ime-consuming
elec ophysiologic mapping p ocedu es could be a oided,
p oceeding di ec ly wi h PVI.
2. Me hods
2.1. Simula ions
1R episodes sus aining AF we e simula ed using he
phase singula i y dis ibu ion me hod on a olume ic a ial
model buil om clinical da a, as epo ed in [5]. B ie ly,
he phase singula i ies we e placed in 300 uni o mly
dis ibu ed poin s in he a ia, and 3 s o ac i a ion we e
Compu ing in Ca diology 2020; Vol 47 Page 1 ISSN: 2325-887X DOI: 10.22489/CinC.2020.181
compu ed. Only he cases wi h 1R episodes ha kep going
o he whole simula ion ime we e conside ed o u he
analysis. This led o unbalanced da a gene a ion. As
esul o he monodomain simula ion, he ansmemb ane
ol age was used o calcula e he body su ace po en ial
map (BSPM) on 8 di e en o so models gene a ed om
segmen ed MRI da a o heal hy male and emale subjec s
(Fig. 1), [5]. F om he BSPM, he 12-lead ECG was
ex ac ed wi h a leng h o 3 s (Fig. 1). Only -wa es
wi hou he QRS-T complex composed he 12-lead ECG,
since he en icles we e no included in he simula ions.
440 se s o 12-lead ECG o med he inal da ase (40 ECGs
wi h 1R loca ed in he PVs, 112 in ex a-PV LA a eas, and
288 in he RA).
2.2. Fea u e ex ac ion
128 ea u es we e ex ac ed om he he signals using
se e al biosignal p ocessing me hods, such as: Hjo
desc ip o s o analyse he spec al momen s om he ime
signals [5]; ecu ence quan i ica ion analysis (RQA) on
ec oca diog am (VCG) [6], indi idual componen RQA
(icRQA), and spa ial educed RQA (s RQA) [7] o analyse
he opological s uc u e o mul idimensional dynamical
sys ems; a io o he p incipal componen analysis (PCA)
eigen alues, o ganiza ion index, and spec al en opy o
s udy he a iabili y and s abili y o hese mechanisms o e
ime and equency [5], [8], [9].
2.3. Fea u e selec ion
The ea u e se was selec ed wi h a g eedy o wa d
selec ion echnique. S a ing wi h an emp y ea u e se ,
his algo i hm added he ea u e which lead o he highes
accu acy inc ease o he se a each i e a ion. The
pe o mances we e based on he alida ion se . When he
pe o mance did no inc ease u he , he algo i hm was
s opped. Candida e ea u es wi h a co ela ion coe icien
>0.6 wi h any o he ea u es al eady included in he se
ha e been emo ed o a oid possible co ela ion be ween
ea u es and edundancy o in o ma ion in o he se .
2.4. Classi ica ion
Due o i s simplici y, a decision ee classi ie was
implemen ed o a 3 classes disc imina ion: PV o o s,
ex a-PV LA o o s, and RA o o s.
All ex ac ed ea u es we e indi idually e alua ed wi h a
decision ee classi ie and a lea e-one-ou c oss- alida ion
echnique. Subsequen ly, wi h he ea u e se selec ed by
he g eedy echnique, a mul i- ea u e classi ica ion wi h
hold-ou c oss- alida ion was pe o med (70%, 15%, and
Table 1. Th ee single ea u es wi h he highes accu acy
o PV s. ex a-PV LA s. RA classi ica ion
Fea u e Accu acy (%)
RR
V CG 80.9
EDL
s RQA 80.4
EV L
icRQA480.0
15% o he o al da ase was andomly di ided in o aining
se , alida ion se , and es se , espec i ely). Sensi i i y
and speci ici y we e calcula ed o each class conside ing
he class a hand as posi i e and he emaining wo classes
as nega i e.
2.5. S a is ical analysis
The abili y o he ea u es in sepa a ing he di e en
classes was assessed using he he K uskal-Wallis non-
pa ame ic one-way analysis o a iance o a mul i-class
e alua ion. p- alues o less han 0.01 we e conside ed
s a is ically signi ican .
3. Resul s
3.1. Fea u es e alua ion
All ea u es showed an indi idual and signi ican
disc imina o y powe . Among hem all, RQA’s pa ame e s
ha e s ood ou pa icula ly well. Indeed, he mos
disc imina ing 3 indi idual ea u es we e: he ecu ence
a e ex ac ed om VCG (RR
V CG); he diagonal en opy
ex ac ed wi h s RQA (EDL
s RQAd; and he e ical en opy
ex ac ed wi h icRQA (EV L
icRQA4). Table 1 shows he
accu acy singula ly eached. These 3 ea u es showed
signi ican ly highe alues o 1R loca ed in he PV class,
ollowed by he ex a-PV LA class, and he RA class,
espec i ely (Fig. 2).
3.2. Ro o s loca ion classi ica ion
The decision ee classi ie achie ed 89.4% es
accu acy wi h a ea u e se o 18 ea u es, wi h sensi i i y
o 93.0%, 82.4%, and 83.3%, and a speci ici y o 95.2%,
77.8%, and 83.3% o RA, ex a-PV LA, and PV class
espec i ely. 5 selec ed ea u es ha e been calcula ed using
RQA me hods (including he 3 bes ea u es showed in
sec ion 3.1). 11 selec ed ea u es ha e been ex ac ed om
he a io o he PCA eigen alues app oach. Finally, 2
selec ed ea u es belonged o he Hjo desc ip o s. Table 2
shows he es -se con usion ma ix ob ained om he
decision ee using he ea u e se (class LA ep esen s
class ex a-PV LA).
Page 2
Figu e 1. A.1: Simula ed PV o o . B.1: Simula ed ex a-PV LA o o . C.1 : Simula ed RA o o . The ed a ows show he
o o posi ion and di ec ion. A.2-B.2-C.2: BSPMs o one o he 8 o so models gene a ed om MRI. The o so po en ial
was ob ained by sol ing he o wa d p oblem o elec ophysiology om he simula ed TMV on he a ia. A.3-B.3-C.3:
Example o he -wa e o lead I, II, and V1 om he 12-lead ECG signals ex ac ed om he BSPMs.
Table 2. Tes -se con usion ma ix o RA, ex a-PV LA,
and PV o o s classi ica ion
T ue class
RA LA PV
P edic ed class
RA 40 2 0
LA 3 14 1
PV 0 1 5
4. Discussion and Conclusions
Simula ions p o ide ideal and con olled scena ios
whe e he g ound u h o AF pe pe ua ion sus ained by
1R is known in all he cases. This allows he analysis
o each simula ion wi hou he in luence o seconda y, o
unknown, mechanisms, e.g., o he simul aneous o o s.
The RQA’s pa ame e s showed o be key ea u es o his
classi ica ion (Table 1). P obably due o hei sensi i i y
in de ec ing changes in he dynamic beha io o hese
mechanisms. In ac , looking also a he example ECGs in
Fig. 1A-B-C.3, ou simula ions ha e shown ha he ECG
signals a e mo e i egula in cases when 1R is no in he
PVs a ea. This in o ma ion was also quan i ied by some
RQA pa ame e s, ha ing signi ican ly highe alues o
he RA class, ollowed by he ex a-PV LA class, ending
wi h lowe alues o he PV class (Fig. 2). This can be
seen as con i ma ion o wha was sugges ed in a p e ious
s udy [5].
As men ioned abo e, he ECG signals in he case o 1R
no loca ed in he PVs a eas a e mo e i egula . All ea u es
ex ac ed we e aimed a de ec ing hese i egula i ies and
di e ences be ween classes. The esul s ob ained wi h
he hold-ou c oss- alida ion showed ha an au oma ic
Page 3
Figu e 2. Boxplo s o he 3 single ea u es wi h he
highes accu acy o PV ( ed) s. ex a-PV LA (blue) s.
RA (g een) o o loca ion classi ica ion. All ea u es a e
s a is ically di e en be ween he classes wi h p <0.01
classi ie wi h he ea u es ex ac ed in his wo k can
po en ially iden i y he a ea whe e a 1R is loca ed using
he 12-lead ECG.
The high sensi i i y and speci ici y alues ob ained
o all classes show ha his au oma ic classi ica ion
me hod ca ego izes mos o he cases in analysis in o he
co ec class. The e o e, i 1R was classi ied as a PV
case, doc o s could p oceed di ec ly wi h a PVI by c yo-
abla ion, wi hou using a p io i mapping sys em. In he
o he cases, a adio equency abla ion p ocedu e wi h a
p e ious mapping o he elec ical ac i i y o he a ium o
in e es would be equi ed.
The use o a non-in asi e echnique (i.e., 12-lead ECG),
in combina ion wi h machine lea ning app oaches, may
di ec ly sugges o he doc o he a ial egions ha may
be impo an in he AF pe pe ua ion, and hence a ge s
o abla ion. Fu he es s on clinical da a, labelled by
inspec ing he local ac i a ion maps, a e necessa y o
e ec i ely assess he p oposed app oach. A subsequen
s udy o p edic he ou come o PVI in cases whe e he AF
d i e is in PV is ongoing.
In conclusion, his wo k could be ex ended wi h a
p io cha ac e iza ion o di e en AF d i e mechanisms
and AF complexi y analysis. Se e al and mo e
obus classi ica ion algo i hms can be es ed and mo e
simula ions can be gene a ed wi h di e en a ial models.
Acknowledgmen s
The au ho s hank Debo ah Nai n o he aluable
sugges ions. Resea ch suppo ed by he Eu opean Union’s
Ho izon 2020 esea ch and inno a ion p og amme unde
he Ma ie Sklodowska-Cu ie g an ag eemen No.766082
(MY-ATRIA). TPA ecei ed suppo om he B i ish
Hea Founda ion (PG/18/33/33780 and BHF Resea ch
Accele a o ). All au ho s con i m ha hey ha e no o he
ela ionships ele an o he con en s o his pape o
disclose.
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Add ess o co espondence:
Gio gio Luongo, Ka ls uhe Ins i u e o Technology (KIT)
F i z-Habe -Weg 1, 76131 Ka ls uhe, Ge many
[email p o ec ed]
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