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Marc C. Heuermann (Leibniz Institute of Plant Genetics and Crop Plant Research, IPK; ORCID: 0000-0002-5520-5287), Kerstin Neumann (Leibniz Institute of Plant Genetics and Crop Plant Research, IPK; ORCID: 0000-0001-7451-7086), Klará Panzarová (Photon Systems Instruments, PSI; ORCID: 0000-0001-7519-5162), Manuel Feser (Leibniz Institute of Plant Genetics and Crop Plant Research, IPK; ORCID: 0000-0001-6546-1818) Use Case (Pilot) 11: BrAPI4PSI - BrAPI Integration on PSI Hardware BrAPI4PSI is developing a Breeding API (BrAPI) integration for phenotyping images recorded on PSI phenotyping systems in European high-throughput phenotyping facilities together with the company PSI. It is being developed as an example for the IPK PhenoSphere PhenoCrane system, which was built by PSI for the IPK Gatersleben. The PhenoSphere system currently uses a proprietary data management system to store, access, and analyze the images. To adhere to the FAIR principles the research data management should use open standards such as BrAPI (https://brapi.org/) and ISA-JSON in compliance with the MIAPPE standard. For experiment registration, the ISA Wizard is currently being considered to assist the user in creating FAIRand ISA-compliant metadata. A BrAPI integration will FAIRify the PhenoCrane images captured at the IPK Gatersleben. ISA Wizard (https://github.com/IPK-BIT/isa-wizard) BrAPI Integration into PSI Software FAIRPHENOME (DE: IPK, NL: WUR, PSI) applied to on 15th Sep 2025 to the ELIXIR Biodiversity, food security and pathogens (BFSP) Call PSI integrated a reduced BrAPI Core implantation for testing PSI will provide a BrAPI implementation in their software (Their programmer has left the company, and we have requested an extension of the project until the end of 2025.) The ISA Wizard guides users to generate a study/investigation file in ISAJSON format. ISA-JSON → send to the PSI Software to register an experiment connect Builds on UC11 Outcome: - Integrate the ISA-Wizard into the PSI software environment, to register metadata (Study/Investigation files) - Generate an Assay file from the imaging events (script based) - BrAPI extracts metadata and image URLs
