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[SaxFDMTagung2025] Share your Bioimage Data with the World

Wetzker, Cornelia; Massei, Riccardo; Schlierf, Michael

Abstract

This poster presents motivations and strategies to share bioimage data in life science research. It presents NFDI4BIOIMAGE as a consortium in research data management in bioimaging and bioimage analysis and its data stewardship team. The consortium NFDI4BIOIMAGE is funded by DFG grant number NFDI 46/1, project number 501864659.

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Share your bioimage data with the world Cornelia Wetzker Center for Molecular and Cellular Bioengineering, Technische Universität Dresden 0000-0002-8367-5163 Michael Schlierf B CUBE - Center for Molecular Bioengineering, Technische Universität Dresden 0000-0002-6209-2364 Riccardo Massei Umwelt-Forschungs-Zentrum Leipzig 0000-0003-2104-9519 SAMPLE PREPARATION IMAGING DATA PROCESSING COLLABORATIVE DATA EXPLORATION DATA SHARING and REUSE BIOIMAGE DATA ANALYSIS PROJECT PLANNING NEXT GENERATION FILE FORMATS Use open standardized file formats with extensive metadata BIOIMAGE MANAGEMENT PLATFORMS Use tools for EASY and COLLABORATIVE ACCESS, ANNOTATION and VISUALIZATION of your data dataset from publicly available data collected at Trends in Microscopy 2025 benefits for you shared access to data in research teams enhanced collaboration benefits for all increased scientific output THE DATA STEWARDSHIP TEAM COMMUNITY SUPPORT we provide support on bioimage data handling such as metadata annotations data upload to community repositories bioimage data management (tools) linkage to further experimental data we connect to experts in the field we collaborate via community-use-cases we develop tools and workflows for the community we will share training materials and offer trainings we offer support via a helpdesk reach us with questions and feedback via [email protected] or forum.image.sc Mohsen Ahmadi Greifswald Vanessa Fuchs Düsseldorf Ksenia Krooß Düsseldorf Riccardo Massei Leipzig Maximilian Müller Konstanz Jens Wendt Münster Cornelia Wetzker Dresden The work of the German consortium NFDI4BIOIMAGE is funded by the Deutsche Forschungsgemeinschaft (DFG grant number NFDI 46/1, project number 501864659). The used materials are all shared under a CC-BY 4.0 license (creativecommons.org/licenses/by/4.0): 'Monolithic-vs-chunked' by Henning Falk, ©2022 NumFOCUS, https://zenodo.org/ records/7037679. The content of this poster is shared under the terms of the Creative Commons Attribution License (CC-BY 4.0, creativecommons.org/ licenses/by/4.0) This poster is shared on zenodo under a CC-BY 4.0 license (creativecommons.org/licenses/by/4.0): 10.5281/zenodo.17659149 PUBLIC DISCIPLINE-SPECIFIC ARCHIVES for ANNOTATED BIOIMAGE DATA SHARE your DATA with the world, not just summaries of it! database for bioimage datasets including visualization of data in nextgeneration file formats Image Data Resource benefits for you increase of visibility and worship of your work benefits for all increase of (interdisciplinary) scientific output economization of resources by reuse and reduced redundancy increase of availability of bioimage data OMERO-based bioimage data archive including multimodal experiments with extensive metadata