Versioned Archive and Review of Biotic Interactions and Taxon Names Found within globalbioticinteractions/fungaltraits hash://md5/174fbe90a153e96adda9d3bccb32126b

Versioned Archive and Review of Biotic Interactions and Taxon Names Found within globalbioticinteractions/fungaltraits hash://md5/174fbe90a153e96adda9d3bccb32126b by Nomer, Elton and Preston, three naive review bots [email protected] https://globalbioticinteractions.org/contribute https://github.com/globalbioticinteractions/fungaltraits/issues 2025-12-06 Abstract Life on Earth is sustained by complex interactions between organisms and their environment. These biotic interactions can be captured in datasets and published digitally. We present a review and archiving process for such an openly accessible digital interactions dataset of known origin and discuss its outcome. The dataset under review, named globalbioticinteractions/fungaltraits, has fingerprint hash://md5/174fbe90a153e96adda9d3bccb32126b, is 660MiB in size and contains 34,958 interactions with 4 unique types of associations (e.g., hasHost) between 26,163 primary taxa (e.g., Russula) and 2,389 associated taxa (e.g., Glycine max). This report includes detailed summaries of interaction data, a taxonomic review from multiple catalogs, and an archived version of the dataset from which the reviews are derived. Contents Introduction 2 Data Review and Archive . . . . . . . . . . . . . . . . . . . . . . . . . 2 Methods 2 Results 4 Files..................................... 4 ArchivedDataset.............................. 13 BioticInteractions ............................. 13 1 Interaction Networks . . . . . . . . . . . . . . . . . . . . . . . . . 18 TaxonomicAlignment ........................... 18 AdditionalReviews............................. 25 GloBIReviewBadge............................ 26 GloBIIndexBadge............................. 27 Discussion 27 Acknowledgements 28 Author contributions 28 References 28 Introduction Data Review and Archive Data review and archiving can be a time-consuming process, especially when done manually. This review report aims to help facilitate both activities. It automates the archiving of datasets, including Darwin Core archives, and is a citable backup of a version of the dataset. Additionally, an automatic review of species interaction claims made in the dataset is generated and registered with Global Biotic Interactions (J. H. Poelen, Simons, and Mungall 2014). This review includes summary statistics about, and observations about, the dataset under review : Põlme, S., Abarenkov, K., Henrik Nilsson, R. et al. FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles. Fungal Diversity 105, 1–16 (2020). https://doi.org/10.1007/s13225020-00466-2 https://github.com/globalbioticinteractions/fungaltraits/archive/5deaa2fbd5efcc1cda0771d050ed8dfa81234f08.zip 2025-12-05T23:41:45.253Z hash://md5/174fbe90a153e96adda9d3bccb32126b For additional metadata related to this dataset, please visit https://github.c om/globalbioticinteractions/fungaltraits and inspect associated metadata files including, but not limited to, README.md,eml.xml, and/or globi.json. Methods The review is performed through programmatic scripts that leverage tools like Preston (Elliott et al. 2025), Elton (Kuhn, Poelen, and Leinweber 2025), Nomer (Salim and Poelen 2025), globinizer (J. Poelen, Seltmann, and Mietchen 2024) combined with third-party tools like grep, mlr, tail and head. 2 Table 1: Tools used in this review process tool name version preston 0.11.1 elton 0.15.13 nomer 0.5.17 globinizer 0.4.0 mlr 6.0.0 jq 1.6 yq 4.25.3 pandoc 3.1.6.1 duckdb 1.3.1 The review process can be described in the form of the script below 1. # get versioned copy of the dataset (size approx. 660MiB) under review elton pull globalbioticinteractions/fungaltraits # generate review notes elton review globalbioticinteractions/fungaltraits\ > review.tsv # export indexed interaction records elton interactions globalbioticinteractions/fungaltraits\ > interactions.tsv # export names and align them with the Catalogue of Life using Nomer elton names globalbioticinteractions/fungaltraits\ | nomer append col\ > name-alignment.tsv or visually, in a process diagram. dataset origin Elton (a naive review bot) pull (1) indexed interactions generates (2) name alignments Nomer (a naive review bot) extract names (3) generates (5) name catalog uses (4) Figure 1: Review Process Overview 1Note that you have to first get the data (e.g., via elton pull globalbioticinteractions/fungaltraits) before being able to generate reviews (e.g., elton review globalbioticinteractions/fungaltraits), extract interaction claims (e.g., elton interactions globalbioticinteractions/fungaltraits), or list taxonomic names (e.g., elton names globalbioticinteractions/fungaltraits) 3 You can find a copy of the full review script at check-data.sh. See also GitHub and Codeberg. Results In the following sections, the results of the review are summarized 2. Then, links to the detailed review reports are provided. Files The following files are produced in this review: filename description biblio.bib list of bibliographic reference of this review check-dataset.sh data review workflow/process as expressed in a bash script data.zip a versioned archive of the data under review HEAD the digital signature of the data under review index.docx review in MS Word format index.html review in HTML format index.md review in Pandoc markdown format index.pdf review in PDF format indexed-citations.csv.gz list of distinct reference citations for reviewed species interaction claims in gzipped comma-separated values file format indexed-citations.html.gz list of distinct reference citations for reviewed species interactions claims in gzipped html file format indexed-citations.tsv.gz list of distinct reference citations for reviewed species interaction claims in gzipped tab-separated values format indexed-interactions-col-family-colfamily.svg network diagram showing the taxon family to taxon family interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) 2Disclaimer: The results in this review should be considered friendly, yet naive, notes from an unsophisticated robot. Please keep that in mind when considering the review results. 4 filename description indexed-interactions-col-kingdom-colkingdom.svg network diagram showing the taxon kingdom to taxon kingom interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions.csv.gz species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions.html.gz species interaction claims indexed from the dataset under review in gzipped html format indexed-interactions.tsv.gz species interaction claims indexed from the dataset under review in gzipped tab-separated values format indexed-interactions.parquet species interaction claims indexed from the dataset under review in Apache Parquet format indexed-interactions-sample.csv list of species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions-sample.html first 500 species interaction claims indexed from the dataset under review in html format indexed-interactions-sample.tsv first 500 species interaction claims indexed from the dataset under review in tab-separated values format indexed-names.csv.gz taxonomic names indexed from the dataset under review in gzipped comma-separated values format indexed-names.html.gz taxonomic names found in the dataset under review in gzipped html format indexed-names.tsv.gz taxonomic names found in the dataset under review in gzipped tab-separated values format indexed-names.parquet taxonomic names found in the dataset under review in Apache Parquet format 5 filename description indexed-names-resolved-col.csv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-col.html.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-col.tsv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-col.parquet taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolveddiscoverlife.csv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolveddiscoverlife.html.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format 6 filename description indexed-names-resolveddiscoverlife.tsv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolveddiscoverlife.parquet taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-gbif.csv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-gbif.html.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-gbif.tsv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-gbif.parquet taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format 7 filename description indexed-names-resolved-itis.csv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-itis.html.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-itis.tsv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-itis.parquet taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-mdd.csv.gz taxonomic names found in the dataset under review aligned with the Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-mdd.html.gz taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format 8 filename description indexed-names-resolved-mdd.tsv.gz taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-mdd.parquet taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-ncbi.csv.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-ncbi.html.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-ncbi.tsv.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-ncbi.parquet taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format 9 sourceTaxonName interactionTypeNametargetTaxonName referenceCitation EU563480 hasHost Quercus crassifolia Morris,M.H., PerezPerez,M.A., Smith,M.E. and Bledsoe,C.S.; Multiple species of ectomycorrhizal fungi are frequently detected on individual oak root tips in a tropical cloud forest; Mycorrhiza 18 (8), 375-383 (2008) Table 4: Most Frequently Mentioned Interaction Types (up to 20 most frequent) interactionTypeName count hasHost 19780 pathogenOf 14465 interactsWith 576 parasiteOf 137 Table 5: Most Frequently Mentioned Primary Taxa (up to 20 most frequent) sourceTaxonName count Russula 707 Inocybe 584 Phakopsora pachyrhizi 486 Cortinarius 481 Sebacina 456 Glomeraceae Glomus 450 Thelephoraceae 319 Piloderma 162 16 sourceTaxonName count Amphinema 158 Verticillium dahliae 151 Lactarius 148 Tuber 145 Tomentella 108 Cenococcum geophilum 104 Glomeraceae 102 Clavulina 96 Funneliformis 96 Claroideoglomus 94 Laccaria 92 Table 6: Most Frequently Mentioned Associate Taxa (up to 20 most frequent) targetTaxonName count Glycine max 3100 Picea abies 1010 Angiospermae 929 Zea mays 768 Quercus 744 Homo sapiens 700 Pseudotsuga menziesii 591 Solanum tuberosum 511 Pinus sylvestris 482 Citrus × sinensis 462 Fagaceae 365 Quercus liaotungensis 358 Salix arctica 348 Dryas octopetala 329 Daucus carota 318 Plantago lanceolata 299 Dryas integrifolia 294 Vitis vinifera 293 Bistorta vivipara 273 17 Table 7: Most Frequent Interactions between Primary and Associate Taxa (up to 20 most frequent) sourceTaxonName interactionTypeName targetTaxonName count Phakopsora pachyrhizi pathogenOf Glycine max 486 Russula hasHost Oreomunnea mexicana 136 Sebacina hasHost Bistorta vivipara 115 Amphinema hasHost Picea abies 99 Glomeraceae Glomus hasHost Jacobaea vulgaris 94 Thelephoraceae hasHost Bistorta vivipara 88 Thelephoraceae hasHost Dryas octopetala 88 Glomeraceae Glomus hasHost Prunus africana 86 Piloderma hasHost Picea abies 74 Pseudocercospora eumusae pathogenOf Musa 73 Guignardia citricarpa pathogenOf Citrus × sinensis 72 Cortinarius hasHost Pseudotsuga menziesii 63 Cortinarius hasHost Salix arctica 59 Inocybe hasHost Dryas integrifolia 56 Inocybe hasHost Pseudotsuga menziesii 53 Cortinarius hasHost Dryas octopetala 51 Macrophomina pathogenOf Cicer arietinum 48 Sebacina hasHost Dryas integrifolia 46 Guignardia mangiferae pathogenOf Citrus latifolia 45 Interaction Networks The figures below provide a graph view on the dataset under review. The first shows a summary network on the kingdom level, and the second shows how interactions on the family level. It is important to note that both network graphs were first aligned taxonomically using the Catalogue of Life. Please refer to the original (or verbatim) taxonomic names for a more original view on the interaction data. You can download the indexed dataset under review at indexed-interactions.c sv.gz. A tab-separated file can be found at indexed-interactions.tsv.gz Learn more about the structure of this download at GloBI website, by opening a GitHub issue, or by sending an email. Another way to discover the dataset under review is by searching for it on the GloBI website. Taxonomic Alignment As part of the review, all names are aligned against various name catalogs (e.g., col, ncbi, discoverlife, gbif, itis, wfo, mdd, tpt, pbdb, and worms). These 18 Animalia Plantae Chromista Fungi Bacteria Protozoa Figure 3: Interactions on taxonomic kingdom rank as interpreted by the Catalogue of Life download svg 19 Acaulosporaceae Apiaceae Plantaginaceae Poaceae Pinaceae Fagaceae Polygonaceae Betulaceae Salicaceae AdelococcaceaeOchrolechiaceae Agaricaceae Agaricostilbaceae Arecaceae AigialaceaePosidoniidae Albatrellaceae Amanitaceae Asteropeiaceae Cyperaceae Fabaceae Juglandaceae Thymelaeaceae Ambisporaceae Asparagaceae Cupressaceae Gentianaceae Psilostomidae Rosaceae Amorosiaceae Amphisphaeriaceae Bromeliaceae Ericaceae Taxaceae Amylocorticiaceae Anthracoideaceae Juncaceae Apiosporaceae Aplosporellaceae Moraceae Archaeorhizomycetaceae Archaeosporaceae Amaryllidaceae Arthrodermataceae Hominidae Ascosphaeraceae Apidae Aspergillaceae Apocynaceae Crassulaceae Haloragaceae Hydrocharitaceae Potamogetonaceae Marchantiaceae Aleyrodidae Astrosphaeriellaceae Atheliaceae Bankeraceae Nothofagaceae Bionectriaceae Dasypogonaceae Bolbitiaceae Myrtaceae Boletaceae Dipterocarpaceae Sclerodermataceae Boliniaceae Bombardiaceae Bondarzewiaceae Araucariaceae Casuarinaceae Botryobasidiaceae Botryosphaeriaceae Asteraceae Rutaceae Actinidiaceae Anacardiaceae Podocarpaceae Proteaceae Sapindaceae Vitaceae Bulleribasidiaceae Cainiaceae Camarosporiaceae Solanaceae Camarosporidiellaceae Amaranthaceae Bunocotylidae Elaeagnaceae Simaroubaceae Cantharellaceae Cenangiaceae Cephalothecaceae Rubiaceae Ceratobasidiaceae CeratocystidaceaeCurculionidae Chaetomiaceae Chaetosphaeriaceae Chaetothyriaceae Sagittariidae Papaveraceae Chlorociboriaceae Chytridiaceae PythiaceaeRhizophydiaceae Cladochytriaceae Cladosporiaceae Claroideoglomeraceae Lamiaceae Clavariaceae Clavariadelphaceae Clavicipitaceae Polyporaceae Coccidae Erebidae Lauraceae Berberidaceae Euphorbiaceae Tingidae Clypeosphaeriaceae Cochlearomycetaceae Coniochaetaceae Coniophoraceae Coniosporiaceae Cordycipitaceae Marasmiaceae Aphididae Coccoideaceae Diaspididae Formicidae Hymenochaetaceae Margarodidae Pseudococcidae Scarabaeidae Varroidae Malvaceae Cortinariaceae Crambidae Cronartiaceae Cryphonectriaceae Cryptococcaceae Columbidae CyphellaceaePandanaceae Cyttariaceae Dacryobolaceae Debaryomycetaceae Dermateaceae Diaporthaceae Icacinaceae Ebenaceae Loranthaceae Diatrypaceae Didymellaceae Asphodelaceae Ranunculaceae Didymosphaeriaceae Rhamnaceae Dimargaritaceae Diplocystidiaceae Discinaceae Discinellaceae Dissoconiaceae Diversisporaceae Salvadoraceae Doassansiaceae Alismataceae Araceae Pontederiaceae Eballistraceae Echinodontiaceae Elaphomycetaceae Endoraeciaceae Endosporiaceae Entolomataceae Entorrhizaceae Entrophosporaceae Eremomycetaceae Erratomycetaceae Fibroporiaceae Filobasidiaceae Fomitopsidaceae Gelatinodiscaceae Geoglossaceae Geomoriaceae Georgefischeriaceae Gigasporaceae Ophioglossaceae GjaerumiaceaeLiliaceae Glomeraceae Corsiaceae Melastomataceae Glomerellaceae Orchidaceae Passifloraceae Phyllanthaceae Glomeridae Musaceae Gloniaceae Gnomoniaceae Gomphaceae Gomphidiaceae Graphostromataceae Gymnoascaceae HalosphaeriaceaeOregoniidae Hamatocanthoscyphaceae Helotiaceae Helvellaceae Herpotrichiellaceae Niaceae Heterophyidae Hyaloscyphaceae Hydnaceae Nyctaginaceae Hydnangiaceae Hygrophoraceae Hymenogastraceae Hypocreaceae Parmeliaceae Stereaceae Hypoxylaceae Hysterangiaceae IchneumonidaeBalsaminaceae Incrustoporiaceae Inocybaceae Kickxellaceae Peniophoraceae Lachnaceae Laetiporaceae Cephalotaxaceae Oleaceae Lentitheciaceae Leotiaceae Leptosphaeriaceae Linocarpaceae Magnaporthaceae Malasseziaceae Melampsoraceae Melanconiellaceae Cornaceae Melanommataceae Lycopodiaceae Meruliaceae Microascaceae Pyralidae Microthyriaceae Mollisiaceae Monotomidae Caryophyllaceae Oxalidaceae Morchellaceae Morosphaeriaceae Mortierellaceae Mucoraceae Muyocopronaceae Mycenaceae Mycosphaerellaceae Lythraceae Vizellaceae Myxotrichaceae Velloziaceae Nectriaceae Neocamarosporiaceae Neocelosporiaceae Neodevriesiaceae Acanthaceae Zamiaceae NeomelanconiellaceaeCombretaceae NeoparodiaceaeCannabaceae Niessliaceae NotodontidaeOsmeridae Nowamycetaceae Odontotremataceae Polytrichaceae Omphalotaceae Ophiocordycipitaceae Ophiostomataceae Otideaceae Oxyporaceae Paraglomeraceae Paxillaceae Peronosporaceae Brassicaceae Pestalotiopsidaceae Pezizaceae Pezizellaceae Phacidiaceae Phaeosphaeriaceae Caprifoliaceae Erysiphaceae Phakopsoraceae Phanerochaetaceae Phrymaceae Phyllostictaceae Alcyoniidae Celastraceae Hypericaceae Viscaceae Physalacriaceae Physciaceae Piskurozymaceae Plectosphaerellaceae Araliaceae Cucurbitaceae Linaceae Pleomonodictydaceae Pleosporaceae Typhaceae Convolvulaceae Meliaceae Ploettnerulaceae PodosporaceaeCercopidae Protomycetaceae Psathyrellaceae Pseudeurotiaceae Pseudoclitocybaceae Pucciniaceae Pulvinulaceae Pyronemataceae Rhizopodaceae Rhizopogonaceae Rhynchogastremaceae Rhytismataceae Rickenellaceae Russulaceae Saccharomycetaceae Saccharomycodaceae Saccotheciaceae Schizoparmaceae Schizoporaceae Symplocaceae Sebacinaceae Serendipitaceae Anastrophyllaceae Serpulaceae Sparassidaceae Spizellomycetaceae Sporidiobolaceae Sporocadaceae Santalaceae Stictidaceae Striatiguttulaceae Strophariaceae Suillaceae Sydowiellaceae Tarzettaceae Teratosphaeriaceae Thelephoraceae Tilletiaceae Tilletiariaceae Togniniaceae Tremellaceae Tricholomataceae Trichosporonaceae Trimorphomycetaceae Tritirachiaceae Tubariaceae Tuberaceae Tubeufiaceae Turquoiseomycetaceae Tympanidaceae Tzeananiaceae Uleiellaceae Umbelopsidaceae Urocystidaceae Ruppiaceae Ustilaginaceae Valsariaceae Vamsapriyaceae Venturiaceae Vibrisseaceae WebsdaneaceaeRestionaceae Xenasmataceae XenodevriesiaceaeStrelitziaceae Xylariaceae Acrididae Cypraeidae Viburnaceae Zygospermellaceae Figure 4: Interactions on the taxonomic family rank as interpreted by the Catalogue of Life. download svg 20 alignments can help review name usage or aid in selecting of a suitable taxonomic name resource. Table 8: Sample of Name Alignments providedName relationName resolvedCatalogName resolvedName AB115705 NONE col AB115705 AB115706 NONE col AB115706 AB115707 NONE col AB115707 AB115708 NONE col AB115708 Table 9: Distribution of Taxonomic Ranks of Aligned Names by Catalog. Names that were not aligned with a catalog are counted as NAs. So, the total number of unaligned names for a catalog will be listed in their NA row. resolvedCatalogName resolvedRank count col NA 24842 col class 17 col family 122 col genus 1383 col gigaclass 1 col kingdom 2 col order 47 col phylum 9 col section 1 col species 1998 col subclass 1 col subfamily 2 col subgenus 11 col suborder 1 col subspecies 76 col subterclass 1 col superfamily 3 col superorder 1 col tribe 1 col variety 23 discoverlife NA 28464 discoverlife species 1 gbif NA 24748 gbif class 17 gbif family 130 gbif form 1 gbif genus 1435 21 resolvedCatalogName resolvedRank count gbif kingdom 2 gbif order 47 gbif phylum 9 gbif species 2058 gbif subspecies 94 gbif variety 31 itis NA 26689 itis class 17 itis division 5 itis family 124 itis genus 511 itis infrakingdom 1 itis kingdom 2 itis order 47 itis phylum 4 itis species 1037 itis subclass 3 itis subdivision 1 itis subfamily 3 itis subgenus 2 itis suborder 3 itis subspecies 6 itis superclass 2 itis superfamily 3 itis superorder 3 itis variety 7 mdd NA 28464 ncbi NA 25057 ncbi clade 4 ncbi class 17 ncbi cohort 1 ncbi family 126 ncbi genus 1185 ncbi kingdom 1 ncbi order 48 ncbi phylum 10 ncbi section 1 ncbi species 1982 ncbi subclass 1 ncbi subfamily 4 ncbi subgenus 4 ncbi suborder 2 ncbi subphylum 1 ncbi subspecies 17 22 resolvedCatalogName resolvedRank count ncbi superclass 1 ncbi superfamily 3 ncbi superorder 2 ncbi varietas 3 pbdb NA 27936 pbdb class 15 pbdb family 79 pbdb genus 289 pbdb informal 2 pbdb infraclass 1 pbdb infraorder 1 pbdb kingdom 3 pbdb order 23 pbdb phylum 8 pbdb species 98 pbdb subclass 1 pbdb subfamily 4 pbdb suborder 3 pbdb superclass 3 pbdb superfamily 3 pbdb superorder 1 pbdb tribe 1 pbdb unranked clade 7 tpt NA 28450 tpt family 2 tpt genus 4 tpt species 7 tpt specificepithet 1 tpt subspecificepithet 1 wfo NA 26712 wfo family 44 wfo genus 362 wfo order 3 wfo phylum 1 wfo section 1 wfo species 1319 wfo subspecies 28 wfo variety 11 worms NA 27532 worms class 14 worms family 99 worms genus 427 worms gigaclass 1 worms infraorder 1 23 resolvedCatalogName resolvedRank count worms infraphylum 1 worms kingdom 2 worms order 43 worms phylum 7 worms phylum (division) 4 worms species 327 worms subclass 2 worms suborder 1 worms subspecies 8 worms subterclass 1 worms superorder 1 worms variety 2 Table 10: Name relationship types per catalog. Name relationship type “NONE” means that a name was not recognized by the associated catalog. “SAME_AS” indicates either a “HAS_ACCEPTED_NAME” or “SYNONYM_OF” name relationship type. We recognize that “SYNONYM_OF” encompasses many types of nomenclatural synonymies (ICZN 1999) (e.g., junior synonym, senior synonyms). resolvedCatalogName relationName count col NONE 24845 col HAS_ACCEPTED_NAME 3496 col SYNONYM_OF 779 discoverlife NONE 28540 discoverlife HAS_ACCEPTED_NAME 1 gbif NONE 24749 gbif HAS_ACCEPTED_NAME 4295 gbif SYNONYM_OF 1378 itis NONE 26719 itis HAS_ACCEPTED_NAME 1704 itis SYNONYM_OF 201 mdd NONE 28523 mdd HAS_ACCEPTED_NAME 2 ncbi NONE 25074 ncbi SAME_AS 3312 ncbi SYNONYM_OF 212 pbdb NONE 27978 pbdb HAS_ACCEPTED_NAME 557 pbdb SYNONYM_OF 42 tpt NONE 28509 24 resolvedCatalogName relationName count tpt HAS_ACCEPTED_NAME 19 wfo NONE 26753 wfo SYNONYM_OF 386 wfo HAS_ACCEPTED_NAME 1616 wfo HAS_UNCHECKED_NAME 159 worms NONE 27559 worms HAS_ACCEPTED_NAME 1022 worms SYNONYM_OF 86 Table 11: List of Available Name Alignment Reports catalog name alignment results col associated names alignments report in gzipped html, csv, and tsv) ncbi associated names alignments report in gzipped html, csv, and tsv) discoverlife associated names alignments report in gzipped html, csv, and tsv) gbif associated names alignments report in gzipped html, csv, and tsv) itis associated names alignments report in gzipped html, csv, and tsv) wfo associated names alignments report in gzipped html, csv, and tsv) mdd associated names alignments report in gzipped html, csv, and tsv) tpt associated names alignments report in gzipped html, csv, and tsv) pbdb associated names alignments report in gzipped html, csv, and tsv) worms associated names alignments report in gzipped html, csv, and tsv) Additional Reviews Elton, Nomer, and other tools may have difficulties interpreting existing species interaction datasets. Or, they may misbehave, or otherwise show unexpected behavior. As part of the review process, detailed review notes are kept that document possibly misbehaving, or confused, review bots. An sample of review notes associated with this review can be found below. 25