de.NBI hackathon 2025 - Project 7 introduction and report presentations
Abstract
This record contains the presentations given at the 4th BioHackathon Germany (1–5 Dec 2025, Walsrode) by de.NBI / ELIXIR-DE, introducing the project on "Integrating Data Science Capabilities within the OMERO Data Management Ecosystem" and summarizing its results. We acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659.
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Integrating Data Science Capabilities within the OMERO Data Management Ecosystem Tom Boissonnet (HHU Düsseldorf) Riccardo Massei (UFZ Leipzig) 1
OMERO.figure -metadata refresh 2
OMERO.figure -plate label -export low res 3
OMERO.figure -align to grid 4
OMERO Collections (RFC-8) -napari-omero 5
OMERO Collections (RFC-8) -iviewer 6
Palynology -iviewer 7
8 Galaxy OMERO-suite Tool credential implemented in the Galaxy tools Possibility to connect using the UUID session key (enhanced security) This feature will be available in the next Galaxy release (25.1) Main Goal: Enhance the tools credential security using the new credential vault system
omero-parade2 / crossfilter / <name idea> 9
Miscilleneous 16 https://ome.github.io/status/ Zarr-java release Docker debug NixOS setup Docker setup omero-rdf omero-ontop omero-autotag omero-openlink