Current knowledge on mechanisms preventing photosynthesis redox imbalance in plants

antioxidants Review Current Knowledge on Mechanisms Preventing Photosynthesis Redox Imbalance in Plants María-Cruz González 1,* , Francisco Javier Cejudo 1, Mariam Sahrawy 2and Antonio Jesús Serrato 2,*   Citation: González, M.-C.; Cejudo, F.J.; Sahrawy, M.; Serrato, A.J. Current Knowledge on Mechanisms Preventing Photosynthesis Redox Imbalance in Plants. Antioxidants 2021,10, 1789. https://doi.org/ 10.3390/antiox10111789 Academic Editor: Michel Havaux Received: 11 October 2021 Accepted: 5 November 2021 Published: 9 November 2021 Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations. Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/). 1Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla-Consejo Superior de Investigaciones Científicas (CSIC), Avda. Américo Vespucio 49, 41092 Sevilla, Spain; [email protected] 2Departamento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas (CSIC), 18008 Granada, Spain; [email protected] *Correspondence: [email protected] (M.-C.G.); [email protected] (A.J.S.) Abstract: Photosynthesis includes a set of redox reactions that are the source of reducing power and energy for the assimilation of inorganic carbon, nitrogen and sulphur, thus generating organic compounds, and oxygen, which supports life on Earth. As sessile organisms, plants have to face continuous changes in environmental conditions and need to adjust the photosynthetic electron transport to prevent the accumulation of damaging oxygen by-products. The balance between photosynthetic cyclic and linear electron flows allows for the maintenance of a proper NADPH/ATP ratio that is adapted to the plant’s needs. In addition, different mechanisms to dissipate excess energy operate in plants to protect and optimise photosynthesis under adverse conditions. Recent reports show an important role of redox-based dithiol–disulphide interchanges, mediated both by classical and atypical chloroplast thioredoxins (TRXs), in the control of these photoprotective mechanisms. Moreover, membrane-anchored TRX-like proteins, such as HCF164, which transfer electrons from stromal TRXs to the thylakoid lumen, play a key role in the regulation of lumenal targets depending on the stromal redox poise. Interestingly, not all photoprotective players were reported to be under the control of TRXs. In this review, we discuss recent findings regarding the mechanisms that allow an appropriate electron flux to avoid the detrimental consequences of photosynthesis redox imbalances. Keywords: thioredoxins (TRX); photosynthesis; redox; NADPH thioredoxin reductase C (NTRC); non-photochemical quenching (NPQ); cyclic electron flow (CEF); ferredoxin/PGR5/PGRL1-dependent plastoquinone reductase (PGR5/PGRL1); NADH dehydrogenase-like complex (NDH) 1. Introduction Most of life on Earth is sustained by photochemical reactions. In general terms, in the so-called linear electron flow (LEF), photosynthetic light reactions involve three multi-protein complexes: photosystems (PS) II and I, and the cytochrome b 6 f(Cyt b 6 f) complex [ 1 , 2 ]. PS are associated with light-harvesting complexes (LHCs), which are responsible for sunlight absorption in plants and green algae [ 3 , 4 ]. LEF starts with the photo-induced water oxidation that donates electrons to PSII and ends with the ferredoxin (Fd) reduction by PSI. Additionally, a balancing cyclic electron flow (CEF) works together with LEF to fine-tune the whole photosynthetic process [ 5 , 6 ]. CEF depends on additional photosynthetic complexes: the NADH dehydrogenase-like (NDH) complex and/or the ferredoxin/PROTON GRADIENT REGULATION 5 (PGR5)/PGR5-LIKE PHOTOSYNTHETIC PHENOTYPE 1 (PGRL1) complex. Oxygenic photosynthesis provoked the rise of molecular oxygen (O 2 ) in the atmosphere approximately 2.3–2.4 billion years ago [ 7 , 8 ]. Exposition to higher levels of O 2 , and its derivative reactive oxygen species (ROS), led to a massive extinction event [ 9 ]. From then on, living organisms have taken advantage of ROS to regulate their own development [ 10 , 11 ]. In plants, both enzymatic and non-enzymatic systems scavenge excess ROS thus preventing ROS-derived damage to different cell components, such as DNA, lipids Antioxidants 2021,10, 1789. https://doi.org/10.3390/antiox10111789 https://www.mdpi.com/journal/antioxidants Antioxidants 2021,10, 1789 2 of 17 and proteins [ 12 ]. In chloroplasts, ROS play a key role in the photoinhibition of PSII under high light, hindering its repair through the inhibition of D1 translation [ 13 ]. However, despite their potentially harmful effects, ROS derived from photosynthesis [ 14 , 15 ] have a relevant role as signalling molecules for the regulation of chloroplast processes with an important impact on plant development and acclimation to environmental stress [ 11 , 14 – 17 ]. To preserve plant performance under adverse environmental conditions, the photosynthetic electron transport chain (PETC) must be finely tuned according to internal and external signals. Plant photosynthesis allows the use of reducing equivalents, generated by light-driven extraction of electrons from water, to support biosynthetic pathways, including CO 2 fixation or nitrogen assimilation. In general terms, PETC performance greatly depends on a proper balance between absorbed light and the metabolic demand for chemical energy. Rapid environmental changes can overflow PETC causing the accumulation of ROS, which may damage the most sensitive molecular components of the photosynthetic machinery [ 13 ]. When redox imbalance occurs in chloroplasts, for instance, due to strong fluctuations in light intensity, protective mechanisms are triggered to preserve redox homeostasis. As previously mentioned, many of these mechanisms rely on scavenging over-accumulated ROS [ 12 ]. At the same time, an additional strategy consists in rebalancing photosynthesis to cope with unfavourable growth conditions, thus preventing an oxidative burst and its harmful outcomes through several conserved regulatory mechanisms, which include (i) balancing the NADPH/ATP ratio with the cyclic electron flow (CEF) carried out by the chloroplast NADH dehydrogenase-like (NDH) and the Fd/PGR5/PGRL1-dependent PQ reductase (PGR5/PGRL1) complexes, (ii) dissipating excess energy by non-photochemical quenching (NPQ), (iii) the appearance of new quenching sites in PSII peripheral antenna, (iv) redistribution of excitation energy through state transitions dependent on the phosphorylation of LHCII, (v) specific removal and repair of PSII damaged protein components, such as D1 and the extrinsic protein PsbO, and (vi) regulating the plastoquinone reduction by the plastid terminal oxidase (PTOX). Photosynthetic complexes located at the chloroplast thylakoid membrane define two fine-tuned interconnected sub-compartments. While intrinsic proteins face both the thylakoidal lumen and the stroma, extrinsic proteins face either one or another side and, consequently, these photosynthesis complexes interact in synchrony within two physically separated protein networks. Regarding redox poise and pH, the stroma is a more reducing and basic environment than the thylakoid lumen [ 18 ]. Because sunlight intensity is continuously changing in nature, photosynthesis control (and protection) largely relies on fast regulatory mechanisms involving redox-based post-translational modifications (PTMs), which take place at both sides of thylakoid membranes in a coordinated manner [ 19 ]. When proteins are exposed to ROS, sulfhydryl groups (-SH) of Cys residues can be oxidised to sulfenic acid (-SOH) [ 20 ]. The occurrence of another Cys near this group can lead to the formation of a covalent intraor intermolecular disulphide bond [ 21 ]. Usually, this PTM has important effects on protein conformation, activity and even stability, hence becoming a dynamic regulatory mechanism in some proteins that can switch between two redox states (thiol/disulphide) or form multiprotein complexes [ 22 – 24 ]. Some members of the chloroplast thioredoxin (TRX) family were reported to be key players in the redox regulation of light-dependent processes [ 25 – 28 ]. TRXs are redox signalling proteins with an active site containing two Cys separated by two amino acid residues (CXXC). These redox proteins are prone to transfer electrons to target proteins and their enzymatic mechanism implies a dithiol/disulphide interchange [ 29 ]. In chloroplasts, these proteins are reduced by the Fd-TRX reductase (FTR), which receives electrons from photosynthetically reduced Fds [ 30 ]. Classic TRXs, with the conserved active site WCG/PPC, form a multigenic family composed of different types (f,m,x,yand z) [31,32]. In Arabidopsis thaliana, the fand m-types are the most abundant TRX isoforms in the chloroplast [ 33 ] and participate in the regulation of important processes such as the Calvin–Benson cycle and the photosynthesis light reactions [ 34 – 36 ]. Chloroplast non-classic TRXs include a particular protein named NADPH TRX reductase C (NTRC), which receives reducing equivalents from NADPH [ 37 , 38 ] and Antioxidants 2021,10, 1789 3 of 17 was proposed to be a key player in chloroplast redox homeostasis [ 39 , 40 ]. Interestingly, classic TRXs and NTRC are restricted to the chloroplast stroma, indicating that redox regulation is particularly relevant in this chloroplast compartment in line with recent reviews that have highlighted the importance of redox regulation of stromal processes [ 34 , 35 , 41 ]. Besides stromal TRXs, lumenal TRX-like counterparts, such as HCF164, anchored to the thylakoid membrane, were identified [ 42 ]. HCF164 can receive reducing equivalents from stromal TRXs mthrough the thylakoid-membrane protein CCDA [ 19 , 43 , 44 ]. Therefore, according to the current model, the lumenal system CCDA/HCF164 depends on the stromal FTR/TRX redox system. Nevertheless, the interrelation between stromal and lumenal TRXs in the redox regulation of light reactions of photosynthesis is largely unknown. As photosynthesis can be considered the most important biological process for life on Earth, the knowledge of the signalling networks, including redox regulation, that operates in the control of light reactions of photosynthesis, is key to understanding the life-adaptation success on our planet. Thus, the aim of this review is to unveil an integrative view of the different regulatory mechanisms rebalancing photosynthesis light reactions under unfavourable conditions. In this regard, TRXs are key regulatory players receiving information about the redox state of the PETC, conveying back this information to orchestrate the whole photosynthetic process. However, other mechanisms, with so far no reported TRX-dependent redox regulation, which participate in the balance of redox homeostasis in green tissues, will also be discussed. 2. Balancing Photosynthesis through Cyclic Electron Flow CEF has evolved to divert electrons back to PETC to enhance H + pumping to boost the proton motive force (PMF) across the thylakoid membranes [ 45 ]. PMF has two components, the proton gradient ( ∆ pH) and the membrane potential ( ∆Ψ ), and is responsible for the ATP synthesis by the ATP synthase of the thylakoid membrane, a process that is subjected to redox regulation [ 46 – 48 ]. Other thylakoid-localised transport processes, such as the K + exchange antiporter 3 (KEA3), operate to harmonise PMF with metabolic requirements. KEA3 acts modulating ATP synthesis hence relaxing ∆ pH by proton export from the thylakoid lumen [ 49 ]. KEA3 activity might be controlled via the stroma-located C-terminal domain, possibly by monitoring the NADPH/NADP + ratio [ 50 ]. Wang and co-workers have also proposed a second type of redox regulation involving an N-terminal Cys residue facing the lumen side [50]. The question arising is why plants have two CEF systems, NDH and PGR5/PGRL1 complexes, both of them having a role in protection against light stress. In chloroplasts, multiple interconnected biosynthetic pathways are operating at the same time. In general, these processes are NADPH and ATP consuming, but the NADPH/ATP ratio to support each metabolic pathway is diverse and this ratio must be adapted to specific needs (i.e., Calvin–Benson cycle, nitrogen and sulphur assimilation, lipid biosynthesis, isoprenoid precursor biosynthesis, etc.). Reaching a proper balance between NADPH and ATP, integrating light (energy input), plant development and cell catabolism might involve dynamic processes acting at the photosynthesis level (Figure 1). According to this reasoning, it would be interesting to investigate and shed more light on the role of CEF in plant physiology/metabolism under non-stress conditions. 2.1. The NDH Complex The Arabidopsis NDH complex is composed of 29 subunits (11 of which are plastidencoded) grouped in five subcomplexes [ 51 ]. The chloroplast NDH complex, which has a molecular mass of approximately 700 kDa, shows homology with the respiratory complex I of bacteria and mitochondria. This complex is present as a monomeric complex associated with PSI [ 52 ]. Some authors have recently determined that in A. thaliana plants grown under non-stressing conditions the PSI:NDH ratio is about 45.4 [ 53 ]. Concerning redox regulation of NDH activity, it was proposed that NTRC exerts an activating effect, [ 54 ] whereas TRX m4 was suggested to be a negative regulator [ 55 ] (Figure 1). Whereas several Antioxidants 2021,10, 1789 4 of 17 NDH subunits were identified in a co-immunoprecipitation assay using anti-NTRC antibodies, supporting their redox regulation [ 54 ], the mechanism of TRX m4-dependent NDH regulation remains to be determined [ 55 ]. Since, as far as we know, no thiol/disulphide mechanisms were proposed to directly regulate NDH activity, the post-translational redox regulation of NDH remains elusive. Nevertheless, though indirectly, redox signalling affects NDH regulatory proteins acting at transcriptional or translational levels. For instance, it is known that hydrogen peroxide can trigger the activity of the NDH complex in barley [ 56 ] and that low levels of ascorbic acid or reduced glutathione downregulate genes coding for NDH subunits [ 57 ]. Paradoxically, though many years ago phosphorylation was described to activate the NDH complex [ 58 ], no direct redox regulation has been proved so far for this photosynthetic complex. The question is whether NDHand PGR5/PGRL1dependent CEF integrate different types of chloroplast cues to balance the NADPH/ATP ratio under a broad range of environmental and developmental situations. Interestingly, several orchid species, plants that have a heterotrophic phase in their life cycle, have lost the NDH complex, which led to propose that the loss of NDH complex might be necessary for these plants [ 59 ]. The question is whether this apparently TRX-independent process is related to the role of NDH in non-photosynthetic organs as fruits [60]. Antioxidants 2021, 10, x FOR PEER REVIEW 4 of 18 Figure 1. Photosynthetic processes involved in balancing the NADPH/ATP ratio in Arabidopsis chloroplasts. TRXs receive redox equivalents from the linear electron flow and control the cyclic electron flow to fine-tune the proton motive force and the ATP synthesis. At the same time, KEA3 modulates the ATPase activity controlled by TRXs f/m and NTRC. The soluble electron carriers ferredoxin (Fd) and plastocyanin (PC) operate at both sides of the thylakoid membrane connecting PSI with the CEF complexes and Cyt b 6 f, respectively. Green arrows represent direct activation mediated by TRXs or NTRC; truncated red lines, inhibition. A dashed line indicates a hypothetical interaction. Protein complexes were schematised for a better understanding. 2.1. The NDH Complex The Arabidopsis NDH complex is composed of 29 subunits (11 of which are plastidencoded) grouped in five subcomplexes [51]. The chloroplast NDH complex, which has a molecular mass of approximately 700 kDa, shows homology with the respiratory complex I of bacteria and mitochondria. This complex is present as a monomeric complex associated with PSI [52]. Some authors have recently determined that in A. thaliana plants grown under non-stressing conditions the PSI:NDH ratio is about 45.4 [53]. Concerning redox regulation of NDH activity, it was proposed that NTRC exerts an activating effect, [54] whereas TRX m4 was suggested to be a negative regulator [55] (Figure 1). Whereas several NDH subunits were identified in a co-immunoprecipitation assay using antiNTRC antibodies, supporting their redox regulation [54], the mechanism of TRX m4-dependent NDH regulation remains to be determined [55]. Since, as far as we know, no thiol/disulphide mechanisms were proposed to directly regulate NDH activity, the posttranslational redox regulation of NDH remains elusive. Nevertheless, though indirectly, redox signalling affects NDH regulatory proteins acting at transcriptional or translational levels. For instance, it is known that hydrogen peroxide can trigger the activity of the NDH complex in barley [56] and that low levels of ascorbic acid or reduced glutathione downregulate genes coding for NDH subunits [57]. Paradoxically, though many years ago phosphorylation was described to activate the NDH complex [58], no direct redox regulation has been proved so far for this photosynthetic complex. The question is whether NDHand PGR5/PGRL1-dependent CEF integrate different types of chloroplast cues to balance the NADPH/ATP ratio under a broad range of environmental and developmental situations. Interestingly, several orchid species, plants that have a heterotrophic phase in Figure 1. Photosynthetic processes involved in balancing the NADPH/ATP ratio in Arabidopsis chloroplasts. TRXs receive redox equivalents from the linear electron flow and control the cyclic electron flow to fine-tune the proton motive force and the ATP synthesis. At the same time, KEA3 modulates the ATPase activity controlled by TRXs f/m and NTRC. The soluble electron carriers ferredoxin (Fd) and plastocyanin (PC) operate at both sides of the thylakoid membrane connecting PSI with the CEF complexes and Cyt b 6 f, respectively. Green arrows represent direct activation mediated by TRXs or NTRC; truncated red lines, inhibition. A dashed line indicates a hypothetical interaction. Protein complexes were schematised for a better understanding. Antioxidants 2021,10, 1789 5 of 17 2.2. The PGR5/PGRL1 Complex The PGR5/PGRL1 complex is formed by two subunits and exerts a photo-protective role against high-light mediated stress (Figure 1) [ 61 , 62 ]. Unlike NDH, there are solid experimental data showing the redox-regulation of PGR5 [ 55 , 63 , 64 ]. In line with this notion, it was reported that TRXs mcollectively down-regulate the PGR5/PGRL1 complex [ 63 ]. In planta, TRX m4 downregulates PGR5 activity by reducing PGRL1 (Figure 1) [ 55 ]. In addition, the relevance of the regulation of PGR5/PGRL1 on the chloroplast redox state was evidenced by the recovery of enzyme reduction in the ntrc pgr5 Arabidopsis double mutant [65]. The cyanobacteria Synechocystis sp. contains PGR5 but not PGRL1 [ 66 ]. Nevertheless, in spite of the low similarity between the cyanobacterial protein SII1217 and PGRL1, both proteins might be functionally related, suggesting a putative prokaryotic origin of PGRL1. Interestingly, Arabidopsis PGRL1 has six cysteine residues whereas cyanobacterial SII1217, which has not been shown to be redox-regulated, has only three [ 63 , 64 ]. Anyway, Synechocystis mediates the non-photochemical reduction of PQ possibly via CEF through the NDH-1 complex [ 67 , 68 ]. Another aquatic organism, the marine angiosperm Zostera marina, conserves the two CEF systems and shares with land plants a similar response to respond to excess radiation [69]. 2.3. Ferredoxins: Active Players Balancing Linear and Cyclic Electron Flows? Chloroplast Fds are small proteins containing a [2Fe:2S] cluster with low redox potentials. These proteins regulate electron partitioning in plant chloroplasts by transferring electrons from photo-reduced PSI to different stromal proteins such as Fd NADP + reductase (FNR) or FTR, as well as to the thylakoid-located CEF systems NDH and PGR5/PGRL1 [ 70 ]. Arabidopsis harbours four chloroplastic Fd isoforms, namely FD1 (AT1G10960), FD2 (AT1G60950), FDC1 (AT4G14890) and FDC2 (AT1G32550) [ 71 , 72 ]. FD1 and FD2 account for 7% and 90% of the total leaf Fd, respectively [ 73 ]. The presence of several Fd isoforms in plants suggests the existence of specific targets for these enzymes. In this regard, it was hypothesised that FD1 would contribute to CEF and FD2 to LEF [ 74 – 77 ]. FDC1 and FDC2 have an additional extension at the C-terminus, near their active sites, as well as higher redox potentials than FD2, hence FDC1 and FDC2 can be considered atypical Fds [ 71 , 72 ]. Unlike FD1 and FD2, FDC1 is not able to interact with FNR; nevertheless, it can interact with the CEF complexes NDH and PGR5/PGRL1 or with FTR [ 72 ]. These results suggest a role of FDC1 in partitioning providing electrons to specific chloroplast processes. Although there is no experimental evidence so far, the possibility cannot be discarded that FDC2 might have a similar function to FDC1. Its functional significance in plants was proven in rice, where a mutation in the FDC2 ortholog HDY1 provokes leaf yellowing and a delay in flowering time [78]. In photosynthetic organisms, the docking site at PSI, formed by the subunits PsaD and PsaE, allows the electronic transfer between Fds and PsaC [ 79 ]. Remarkably, Arabidopsis has two isoforms of PsaD and PsaE [ 72 ], thus, it is tempting to speculate that the combination of these isoforms might constitute auxiliary docking sites for chloroplast Fds. If this were the case, the donor site of PSI would also play an active role in photosynthesis electron partitioning and redox regulation. 3. Redox Regulation of Non-Photochemical Quenching Light energy reaching the chloroplast can be either emitted as chlorophyll fluorescence or quenched by photochemical (qP) and non-photochemical mechanisms (qN or NPQ). When qP is not sufficient to assimilate all the absorbed energy, a fraction of it must be released as heat by NPQ. NPQ has different components: qE (energy-dependent quenching), qZ (zeaxanthin-dependent quenching), qT (state-transition quenching), qI (photo-inhibitory quenching) and qH (sustained and slowly reversible quenching) [ 80 – 82 ]. Behind all these photoprotective mechanisms, there is a dynamic redox network in which Antioxidants 2021,10, 1789 6 of 17 TRXs play active roles [ 28 ]. It follows now a discussion of the relevance of TRXs in the regulation of the different NPQ components (Figure 2). Antioxidants 2021, 10, x FOR PEER REVIEW 6 of 18 NPQ). When qP is not sufficient to assimilate all the absorbed energy, a fraction of it must be released as heat by NPQ. NPQ has different components: qE (energy-dependent quenching), qZ (zeaxanthin-dependent quenching), qT (state-transition quenching), qI (photo-inhibitory quenching) and qH (sustained and slowly reversible quenching) [80– 82]. Behind all these photoprotective mechanisms, there is a dynamic redox network in which TRXs play active roles [28]. It follows now a discussion of the relevance of TRXs in the regulation of the different NPQ components (Figure 2). Figure 2. Schematic representation of the redox regulation mediated by TRXs f and m of the NPQ components in Arabidopsis. The type of interaction is either represented in green (redox type) or in red (non-redox type). Arrows represent activation; truncated lines, inhibition. A dashed line indicates a hypothetical interaction. Defects in NDH can affect ∆pH formation and lead to impaired activation of NPQ energy-dependent quenching [83]. The pigment zeaxanthin is another key component of NPQ in plants, being responsible for pH-independent qZ, and energy-dependent quenching (qE). In excess light, the high pH gradient favours protonation of PsbS subunit of PSII, triggering qE and activating the enzyme violaxanthin de-epoxidase (VDE), which catalyses the conversion of violaxanthin to zeaxanthin in the thylakoid lumen. This enzyme is stimulated by the thylakoid lumen acidification upon illumination and is active in its oxidised state [84,85]. As TRXs m deliver electrons into the thylakoid lumen through CCDA and HCF164 [19,44], these TRXs can indirectly regulate enzymes such as VDE (Figure 2). VDE was identified as a putative target of a lumenal disulphide-forming enzyme termed Lumen Thiol Oxidoreductase1 (LTO1), suggesting that it could play a key role in the redox-dependent regulation of zeaxanthin levels [86]. The other enzyme participating in the xanthophyll cycle, zeaxanthin epoxidase (ZE), which catalyses the conversion of zeaxanthin and antheraxanthin to regenerate violaxanthin, is also regulated by TRXs. Mutant plants lacking TRXs m accumulate higher levels of aggregated/inactivated ZE and zeaxanthin [87]. In addition, NTRC deficient plants showed increased zeaxanthin levels and elevated qE; however, though NTRC can reduce ZE aggregates in vitro, no alteration of ZE redox state was observed in ntrc mutant plants. Rather, the increased ∆pH under low and moderate light intensities in ntrc plants seems to be responsible for the activation of VDE [88]. 3.1. Photo-Protective Quenching in LHCII: Is Lipocalin Subjected to Redox Regulation? A new component of pH-independent NPQ, sustained quenching or qH, that precedes PSII damage and repair, was recently identified in a search for suppressors of npq4 Figure 2. Schematic representation of the redox regulation mediated by TRXs fand mof the NPQ components in Arabidopsis. The type of interaction is either represented in green (redox type) or in red (non-redox type). Arrows represent activation; truncated lines, inhibition. A dashed line indicates a hypothetical interaction. Defects in NDH can affect ∆ pH formation and lead to impaired activation of NPQ energy-dependent quenching [ 83 ]. The pigment zeaxanthin is another key component of NPQ in plants, being responsible for pH-independent qZ, and energy-dependent quenching (qE). In excess light, the high pH gradient favours protonation of PsbS subunit of PSII, triggering qE and activating the enzyme violaxanthin de-epoxidase (VDE), which catalyses the conversion of violaxanthin to zeaxanthin in the thylakoid lumen. This enzyme is stimulated by the thylakoid lumen acidification upon illumination and is active in its oxidised state [ 84 , 85 ]. As TRXs mdeliver electrons into the thylakoid lumen through CCDA and HCF164 [ 19 , 44 ], these TRXs can indirectly regulate enzymes such as VDE (Figure 2). VDE was identified as a putative target of a lumenal disulphide-forming enzyme termed Lumen Thiol Oxidoreductase1 (LTO1), suggesting that it could play a key role in the redoxdependent regulation of zeaxanthin levels [ 86 ]. The other enzyme participating in the xanthophyll cycle, zeaxanthin epoxidase (ZE), which catalyses the conversion of zeaxanthin and antheraxanthin to regenerate violaxanthin, is also regulated by TRXs. Mutant plants lacking TRXs maccumulate higher levels of aggregated/inactivated ZE and zeaxanthin [ 87 ]. In addition, NTRC deficient plants showed increased zeaxanthin levels and elevated qE; however, though NTRC can reduce ZE aggregates in vitro , no alteration of ZE redox state was observed in ntrc mutant plants. Rather, the increased ∆ pH under low and moderate light intensities in ntrc plants seems to be responsible for the activation of VDE [88]. 3.1. Photo-Protective Quenching in LHCII: Is Lipocalin Subjected to Redox Regulation? A new component of pH-independent NPQ, sustained quenching or qH, that precedes PSII damage and repair, was recently identified in a search for suppressors of npq4 mutant plants lacking PsbS [ 82 , 89 ] (Figure 3). This ∆ pH-independent mechanism, similar to that in evergreens, is dependent on a plastid lipocalin (LCNP), localised in the lumen, and related Antioxidants 2021,10, 1789 7 of 17 to the appearance of new quenching sites in LHCII. LCNP is negatively regulated by SOQ1 (Suppressor of quenching 1), a TRX-like/ β -propeller protein, through a mechanism that is so far unknown [ 82 ]. Since Cys residues of the TRX-like lumenal active-site motif of SOQ1 are required for the suppression of qH, and LCNP contains six conserved Cys, a putative redox-dependent regulation of LCNP by SOQ1 was suggested. However, the downregulation of SOQ1 under drought stress and the inability to reverse the electrophoretic mobility of LCNP with DTT in soq1 mutants, argues against it, suggesting rather an increased activity of LCNP due to the decrease in SOQ1 levels under stress conditions [ 82 ]. Nevertheless, the finding of SOQ1 as a possible NTRC interactor [ 54 ] and the recent identification of LTO1, in a genetic screen for suppressors of soq1 npq4 by Bru and coworkers (2020), has raised again the question of a possible redox regulation of LCNP [ 90 ]. The participation of NTRC in the down-regulation of qH has recently been proposed [91]. Antioxidants 2021, 10, x FOR PEER REVIEW 7 of 18 mutant plants lacking PsbS [82,89] (Figure 3). This ∆pH-independent mechanism, similar to that in evergreens, is dependent on a plastid lipocalin (LCNP), localised in the lumen, and related to the appearance of new quenching sites in LHCII. LCNP is negatively regulated by SOQ1 (Suppressor of quenching 1), a TRX-like/β-propeller protein, through a mechanism that is so far unknown [82]. Since Cys residues of the TRX-like lumenal activesite motif of SOQ1 are required for the suppression of qH, and LCNP contains six conserved Cys, a putative redox-dependent regulation of LCNP by SOQ1 was suggested. However, the down-regulation of SOQ1 under drought stress and the inability to reverse the electrophoretic mobility of LCNP with DTT in soq1 mutants, argues against it, suggesting rather an increased activity of LCNP due to the decrease in SOQ1 levels under stress conditions [82]. Nevertheless, the finding of SOQ1 as a possible NTRC interactor [54] and the recent identification of LTO1, in a genetic screen for suppressors of soq1 npq4 by Bru and co-workers (2020), has raised again the question of a possible redox regulation of LCNP [90]. The participation of NTRC in the down-regulation of qH has recently been proposed [91]. Figure 3. Regulation of the NPQ components in Arabidopsis chloroplasts. TRXs m are key redox players in the regulation of NPQ in plants as they transfer reducing equivalents into the thylakoid lumen through the proteins CCDA and HFC164. The thylakoid protein LTO1, with an oxidant role, contributes to maintaining the redox homeostasis in the chloroplast lumen. Green arrows represent activation mediated by TRXs or NTRC; truncated red lines, inhibition. A dashed line indicates a hypothetical interaction. Protein complexes were schematised for a better understanding. Recently, a new player in qH regulation present in all plastid-containing organisms, ROQH1 (RELAXATION OF QH1), with an antagonistic function to LCNP, was identified. ROQH1 is a stroma lamella membrane-associated protein, belonging to a NAD(P)H-dependent atypical short-chain dehydrogenase/reductase (SDR) subfamily, that produces a dose-dependent relaxation of qH, turning the LCNP created quenching sites back into light-harvesting sites [92]. While SOQ1 is present in Chlamydomonas and Synechocystis sp. as two independent proteins corresponding to the HAD and the NHL/TRX-like domain of SOQ1, and ROQH1 homologues were identified in Synechocystis sp. PCC 6803, the low sequence conservation between LCNP homologues makes it difficult to analyse whether qH is a conserved mechanism from cyanobacteria. Figure 3. Regulation of the NPQ components in Arabidopsis chloroplasts. TRXs mare key redox players in the regulation of NPQ in plants as they transfer reducing equivalents into the thylakoid lumen through the proteins CCDA and HFC164. The thylakoid protein LTO1, with an oxidant role, contributes to maintaining the redox homeostasis in the chloroplast lumen. Green arrows represent activation mediated by TRXs or NTRC; truncated red lines, inhibition. A dashed line indicates a hypothetical interaction. Protein complexes were schematised for a better understanding. Recently, a new player in qH regulation present in all plastid-containing organisms, ROQH1 (RELAXATION OF QH1), with an antagonistic function to LCNP, was identified. ROQH1 is a stroma lamella membrane-associated protein, belonging to a NAD(P)Hdependent atypical short-chain dehydrogenase/reductase (SDR) subfamily, that produces a dose-dependent relaxation of qH, turning the LCNP created quenching sites back into light-harvesting sites [92]. While SOQ1 is present in Chlamydomonas and Synechocystis sp. as two independent proteins corresponding to the HAD and the NHL/TRX-like domain of SOQ1, and ROQH1 homologues were identified in Synechocystis sp. PCC 6803, the low sequence conservation between LCNP homologues makes it difficult to analyse whether qH is a conserved mechanism from cyanobacteria. Antioxidants 2021,10, 1789 8 of 17 3.2. Redistribution of Excitation Energy between the PSs: Role of Redox Regulation of LHCII Kinase and Cyt b6f Assembly in State Transitions Light quality in the natural environment is variable, thus chloroplasts require a dynamic system allowing the distribution of excitation energy between the two photosystems, preventing imbalance in PETC in photosynthetic organisms, and avoiding photoinhibition especially under fluctuating light conditions. In plants and algae, the re-distribution of excitation energy is dependent on state transitions mediated by the phosphorylation of the light-harvesting complex II (LHCII) by a serine/threonine LHCII kinase, known as Stt7 or Stn7 in Chamydomonas reinhardtii and A. thaliana, respectively. The regulation of LHCII phosphorylation and its effect on the migration of LHCII from PSII to the PSI is known for many years: LHCII kinase is activated by reduced PQ in low light and inactivated by TRX in high light [ 93 ]. More recently, a relevant role for the Rieske iron-sulphur protein of the Cyt b 6 fcomplex was proposed, in which the movement of the protein within this complex, after binding of reduced PQ, generates a conformational change in the complex that in turns activates LHCII kinase [ 94 ]. The physical interaction of Stt7 with the Cyt b 6 fcomplex and PSI was demonstrated by co-immunoprecipitation experiments in Chlamydomonas and the Rieske protein was identified as the interactor with Stt7 [95]. The topology of Stt7 was analysed using a tagged protein, revealing that the protein contains a transmembrane domain, with the kinase activity at the stromal side and the N-terminal region, containing the two conserved Cys within algae and plant LCHII kinases, in the lumen. The disulfide bond between these Cys is essential for the phosphorylation of LHCII, suggesting that redox regulation might be critical for Stt7 activity [ 95 ]. This regulation could be mediated by luminal TRX-like proteins, such as HCF164 and CCDA, which were proposed to participate in the transduction of TRX signals from the stroma [ 42 , 96 ]. The work of Shapiguzov et al. (2016) revealed, however, that the disulfide bridge in both Sst7 and Stn7 is maintained during activation and inactivation of the kinases, which questions the redox regulation of LHCII kinase [ 97 ]. It was suggested that two conserved Cys residues of LHCII kinase located in the stroma, but not conserved in algae, could be regulated by the FTR/TRX system, however, the analysis of the specificity of TRXs fand min the process has given contradictory results. While in vitro analysis showed direct interaction between TRX fand Stn7 [ 98 ] and an inhibitory effect of both TRX fand mon LHCII phosphorylation was shown [ 99 ], the analysis of trxm1m2 mutants under fluctuating light conditions not only suggested the activation of Stn7 as a compensatory mechanism to increase photosynthesis during low light periods, but also the essentiality of this regulation for complete activation of photosynthesis during high light periods [ 100 ]. More recently, studies performed with tobacco plants have revealed that plants over-expressing TRX m, but not TRX f, showed a loss of LHCII phosphorylation under low light, suggesting a role for TRX min the deactivation of Stn7. Moreover, since the phenotype of TRX m over-expressing plants mimics that of wild-type plants under high light, when LHCII is not phosphorylated, the results suggest a role for TRX min the deactivation of Stn7 under high light [ 101 ]. Recently, it was reported that the altered chloroplast thiol redox state in ntrc mutants and NTRC over-expressing plants provokes a re-distribution of excitation energy between the two PSs, altering state transitions, through a mechanism that is probably independent of Stn7 but rather mediated by CP29.3, a monomeric LHC protein with a conserved Cys residue [ 91 ]. The precise role of redox regulation on the deactivation of LHCII kinase and the conservation of this mechanism of regulation in both planta and algae remains to be determined. It is worth mentioning that the importance of Stn7 in state transitions in flowering plants is not clear since loss-of-function of this protein does not result in significant alterations of plant development. Instead, only when the stn7 mutation is combined with mutations leading to a decreased pool of PQ the growth rate and state transitions are affected, showing that these transitions are critical when linear electron flow is altered [ 102 , 103 ]. The change in the redox status of the PQ pool provokes long-term changes in gene expression of Lhcb1, probably adjusting the antenna size as an additional mechanism to balance the Antioxidants 2021,10, 1789 9 of 17 use of excitation energy between the two PSs [ 104 ]. The regulation of Stn7 by the PQ redox state [102] supports this hypothesis. Remarkably, the participation of HCF164 in Cyt b 6 fassembly was also proposed [ 42 ]. Apo-cyt fand the haem groups are both synthesised at the stromal side of the thylakoid membrane and are transported independently to the lumen. Once in the lumen, the reduced haem group is attached to the binding site of Cyt fby means of a thioether bond. For this, the apo-cyt must be maintained in a reduced state. The transfer of electrons from the stroma to the lumen and the preservation of apo-cyt fin a reduced state is carried out via CCDA and HCF164, as suggested by the analysis of Arabidopsis ccdA and hcf164 mutants, which show defective Cyt b 6 faccumulation [ 42 , 43 ]. In C. reinhardtii CCS5, and probably CCS4, homologues of HCF164, could reduce the haem binding site in apo-cyt f[ 96 ]. Recent studies pointed out the role of TRXs min the transfer of electrons, needed for Cyt freduction, from the stroma to the lumen through HCF164 [19,96]. Finally, the formation of the iron-sulphur cluster in the Rieske protein, PSI and Fd, depends on the activity of two class-two GRXs, that are unable to reduce disulphide bridges. In chloroplasts, similarly to bacteria, dimers of GRX14 and GRX16, together with the scaffold proteins BOL1 and BOL4, can bind 2Fe:2S clusters and consequently transfer them to Fd in vitro [105,106]. 3.3. Photodamage and Repair of PSII: Redox Regulation of D1 Degradation and PsbO Stability PSII is highly susceptible to excess light, which leads to its irreversible damage, provoking degradation of its core proteins, such as D1. D1 is rapidly replaced in the PSII repair cycle so that photoinhibition only occurs when the rate of repair is slower than the rate of damage [ 107 ]. In contrast, the recovery of photo-inhibited PSI occurs very slowly. For this reason, PSI is protected from photoinhibition by several mechanisms, which include a decreased rate of electron transfer to PSI due to PSII degradation and downregulation of electron transport through Cyt b 6 f, probably mediated by PGR5/PGRL1 [ 62 ]. The relevance of the latter in the protection of PSI from photoinhibition is revealed by the results by Lima-Melo and co-workers (2018), showing that pgr5 mutant plants contained decreased levels of PsaB core subunit and severely decreased Fd reduction under high light conditions. The recovery of PSI in these plants seems to be dependent on the reorganisation of the light-harvesting antenna, through increased phosphorylation of LHCII. In addition, a “reserve” PSI* complex, lacking LHCI antennae and peripheral subunits, could help to support PETC under PSI photoinhibition [108]. PSII consists of more than 30 integral membrane proteins, including the catalytic reaction centre and the chlorophyll-binding proteins, stabilised by extrinsic proteins located at the lumenal side that form part of the Oxygen Evolving Complex (OEC). This complex is formed by four extrinsic proteins, PsbO, PsbP, PsbQ and PsbR. PsbO interacts with several core subunits of PSII and seems to provide a basal structure to which the other OEC subunits are bound [109]. The damage of proteins in the reaction centres of the PSII and their repair constitute the photo-inhibitory quenching, qI, component of NPQ (Figures 2and 3). Damaged D1, and in some cases D2, CP43 and PsbH of the PSII core, are subjected to Deg-dependent proteolysis under conditions of PSII photo-damage, by Deg7, which is associated with the stromal side of the thylakoid membranes. In addition, a role for stromal and lumenal Deg proteases in the degradation of PSII core proteins was suggested [ 107 , 110 ]. Since damaged D1 protein is associated with lower photosynthetic activity, a mechanism for the degradation of the damaged protein is essential to maintain photosynthetic performance. However, the damage to the Mn-cluster seems to be a primary step leading to D1 degradation mediated by the activity of these proteases [ 111 , 112 ]. As a first step for the repair of PSII and the degradation of specific core proteins, the PSII dimers or supercomplexes, located to the grana regions of the thylakoid, must disaggregate to monomers and migrate to stromal thylakoids [ 113 ]. 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